Discovering DNA Communities – Ethnic Origins

A new study uses genetic data and genealogical research from more than 700,000 Ancestry.com <ancestry.com> customers to reveal migration trends in North America over the past 300 years. Findings, which were published in the journal Nature Communications <www.nature.com/article/ncomms14238>, are the basis of AncestryDNA’s Genetic Communities user experience.
According to an Ancestry,com announcement, the study shows “how specific groups of people are connected through their DNA, what places they called home, and which migration paths they followed to get there.” The results correspond strongly with documented history and the results of genetic data done by 23andMe, GPS DNA and Family Tree DNA.
Researchers first identified genetically related groups and smaller clusters within them. Then they used family trees associated with those similar DNA profiles to describe the geographic origins and migration patterns within each cluster. Of specific interest were communities that have develop distinguishable genetic patterns due to “gene flow barriers” such as isolated geographic locations or cultural identity that encourages mating within the community.
Unfortunately, there has not been a methodology research model to reasonably determine African-American and Native-American clusters based on the above mention. The DNA Communities does afford African-American and Native-Americans the opportunity to identify additional relationships based on the DNA Community findings.
If you are a member of FamilyDNA, GPS DNA or 23andMe you will find similar clusters and ethnic communities base on similar methods. The National Geographic Project (Geno 2) was the first and is still actively working to define their results. The only draw back for most is the cost which is over $200 to participate.

 

How 23andMe identifies your DNA Relatives

Scientific Details

Learn about your DNA Relatives, the diverse group of 23andMe customers who have DNA in common with you. Only individuals who have chosen to participate in DNA Relatives are the subject of this report.

How 23andMe identifies your DNA Relatives

To identify your DNA Relatives, we use an algorithm that finds segments of your DNA that are identical to DNA segments of other 23andMe customers. When these segments are sufficiently long, we infer that they were inherited from a recent common ancestor. These segments are known as “identical by descent,” or IBD. Our algorithm searches for these matches across virtually your entire genome, so we can identify DNA Relatives on any branch of your family tree.

Note: IBD/Half IBD:

The comparison results in this feature displays shared segments of DNA on separate lines representing each chromosome pair, and labels the shared segments as Half IBD, or identical by descent. Because you inherit one half of your DNA from your mother and the other half from your father, IBD segments typically occur on only a single chromosome. Half IBD refers to the amount of the genome in centiMorgans (cM) that contains an IBD segment on either chromosome. The percent DNA shared in DNA Relatives is based on this number.

Your half IBD and shared segments vary based on the closeness of your relationship with the matches with whom you are comparing. Closer relatives will share thousands of cM and many segments in common; more distant relatives may share only one. For some of your shares, if you connected outside of DNA Relatives, you may not share any segments at all.

Every time DNA is passed from one generation to the next, the two chromosomes in each pair are randomly shuffled with each other in a process called recombination. Then, only half of this new DNA — one set of chromosomes — is passed down to each child. The total amount of DNA passed down from an ancestor is cut approximately in half each generation. Through this process, long inherited segments are broken up generation by generation into multiple shorter ones and sometimes lost altogether.

Despite all of this generational shuffling, DNA Relatives is highly sensitive and can pick up matches ranging from siblings and uncles to distant eighth cousins — individuals that share great-great-great-great-great-great-great grandparents with you. It may not always be obvious how you share a connection with someone, but that’s where our DNA Relatives tool comes in. Visit the tool to find out more about your matches and get in touch to learn about your family history.

See our Customer Care pages for more information:

Shared segments between cousins

Inheritance family tree graphic.

A closer look at the matching segment

An example graphic showing a matching segment between you and your cousin.

Sources of information used in this report

The Your DNA Family report provides aggregated summaries of several attributes of your DNA Relatives. The following information sources are used in the report:

Report Section
Source
Close to distant DNA Relatives

Computed IBD results from the DNA Relatives tool.

Locations of your DNA Relatives

Answers to survey questions by your DNA Relatives.

Ancestries of your DNA Relatives

Computed results from the Ancestry Composition report.

Traits and behaviors in your 23andMe DNA Family

Answers to survey questions by your DNA Relatives.

Traits in Your DNA Family

Discover Your Roots with DNA

Source: DNA Testing Advisor (www.dna-testing-adviser.com/african-dna-test) Access on May 18, 2017

Discover Your Roots
with an African DNA Test

African Outline

Many African Americans and others are using an African DNA test to get answers about their ethnic ancestry.

Typical questions include the following:

  • How much of my genetic heritage is African?
  • What regions of Africa do my ancestors come from?
  • Where does the remainder of my heritage come from?
  • Is my African ancestry from my father’s lineage or my mother’s?
  • Do my physical features reflect African ancestry or something else?

Fortunately, there are several reasonably-priced African DNA tests that answer these and other questions about one’s ethnic ancestry.

The tests all use home test kits and sample collection is easy and painless. Depending on which company you use, you might wipe some cells from inside your cheek with a little swab or spit some saliva into a tube. No blood is required.

Here are my top seven recommendations for anyone interested in an African DNA test.

1. Ancestry DNA

AncestryDNA recently rose to the top of this list. Both men and women can take the test and it will identify other people in the database who share common ancestors with you. It is an autosomal test similar in technology to Family Finder and 23andMe, discussed below.

The test includes an Ethnicity Estimate that summarizes the percentage contributions of different regions of the world to your overall ancestry. That estimate now breaks African Ancestry into nine regions:

  • Africa North
  • Senegal
  • Ivory Coast / Ghana
  • Benin / Togo
  • Cameroon / Congo
  • Mali
  • Nigeria
  • Africa Southeast Bantu
  • Africa South-Central Hunter-Gatherers

This is the first widely recognized, legitimate DNA test to provide this detailed a breakdown of African ancestry

2. Family Finder, which includes Population Finder

Family Finder is an autosomal DNA test from Family Tree DNA. It’s widely used by genealogists, including those interested in African American genealogy.

The company will compare your DNA against a database of other users to find genetic matches. Most often these genetic matches will be cousins, having a common ancestor with you somewhere in the last five or so generations.

By emailing your matches you can connect with previously unknown relatives and learn much more about your family tree.

As part of the Family Finder test, you receive a myOrigins report, formerly called Population Finder, where the company compares your DNA with over 60 reference populations from around the world. This is a biogeographical analysis of the DNA you received from ALL of your ancestors.

The African part of your DNA may place you in any of four sub continental groups based on similarities to certain scientifically studied populations. The groups and populations are as follows:

  • Central African: Biaka Pygmy, Mbuti Pygmy
  • East African: Bantu (Kenya)
  • Southern African: Bantu (South Africa), San
  • West African: Mandenka, Yoruba

Very few people outside Africa are 100% African. Population Finder will classify the remaining portion of your ancestry using other populations.

3. Y-DNA Test at Family Tree DNA

Family Tree DNA also offers a Y-DNA test, which tracks your paternal line. Since only men have a Y-chromosome, only men can take this test. But women can still test a man from their paternal line, e.g. a brother, a father, a brother of your father, or a son of your father’s brother.

Like Family Finder, this test finds genetic matches who share a common ancestor. But with the Y-DNA test you know the common ancestor has to be a male in the direct paternal line like your father’s father’s father etc.

The Y-DNA test will also predict a man’s Y-DNA haplogroup. And many haplogroups are clearly tied to origins in sub-Saharan Africa. This is the real indicator of your paternal line’s ethnic ancestry.

TIP: If you’re interested in finding genetic matches, you should order the Y-DNA 37 test, which checks 37 markers. But if you’re only interested in determining your haplogroup, you only need 12 markers. I suggest you go to Family Tree DNA and look for the combination package of Family Finder plus Y-DNA 12. The combo price is an excellent buy.

If you later decide that you want to discover your precise position in the Y-DNA tree of life, you can upgrade to more markers or even order a Deep Clade test. That will tell you exactly which subclade of your haplogroup you’re in. In many cases this can tighten the geographic origins of your paternal line.

4. mtDNA Test at Family Tree DNA

Both men and women have mitochondrial DNA (mtDNA) to test. But only women pass it on to their children. So mtDNA is the test to track your maternal line. That’s your mother’s mother’s mother etc.

As with the test described previously, you will probably see matches with other users. But mtDNA mutates so slowly that your common ancestors may have lived thousands of years ago. That makes mtDNA less useful than Y-DNA as a genealogy tool.

Still, mtDNA also has a haplogroup that relates directly to the origins of your maternal line. And some of those are clear indicators of African origin.

5. 23andMe Which Includes Ancestry Composition

23andMe is another autosomal DNA test like Family Finder. This test can also serve as an African DNA test, because it has an Ancestry Composition feature that tells you what parts of the world your ancestors lived a few hundred years ago.

This admixture report is similar to the Population Finder feature of the Family Finder test. It reports on African Ancestry from these three regions:

  • West African
  • East African
  • Central and South African

However, if you also test at least one of your parents on 23andMe, this test can split your ancestral percentages into your paternal and maternal sides.

23andMe also has a DNA Relatives feature that’s similar to Family Finder and it will estimate your Y-DNA and mtDNA haplogroups. So if you want to cover all your bases—then the 23andMe test can be a great value as an African DNA test.

6. Y-DNA and mtDNA Testing at African DNA

Harvard University Professor Henry Louis Gates, Jr. was a pioneer in African DNA testing. He founded African DNA to encourage more African Americans to get their DNA tested.

The company offers a Y-DNA test of 25 markers and an mtDNA test like the mtDNA Plus test at Family Tree DNA. In fact, Family Tree DNA is affiliated with the company and does their DNA testing.

Now they can also offer the Family Finder test that they renamed Ancestry Finder.

Note that African DNA only offers one paternal line Y-DNA test and one maternal line mtDNA test. They do not offer additional Y-DNA markers, the Full Mitochondrial Sequence (FMS) test, or Deep Clade testing. You need to order those tests directly from Family Tree DNA.

The African DNA web site does have more content specific to African DNA testing than any of the more general DNA testing companies. So I encourage anyone looking for an African DNA test to visit the site and learn all you can.

Uniquely, African DNA does offer some higher priced packages that combine DNA testing with genealogy research to build your family tree.

For most African-Americans there are no genealogical records prior to the 1870 census, when last names of former slaves began to be recorded. If you want someone to build a few generations of your family tree, however, this is an option to consider.

MONEY-SAVING TIP: If you’re not ordering a package with genealogy research, be sure to recheck Family Tree DNA to compare prices before placing an order with African DNA. At the time of this writing, you can order the same Y-DNA and mtDNA tests directly through Family Tree DNA for significantly less money.

7. Y-DNA and mtDNA Testing at African Ancestry

African Ancestry is another company that specifically features African DNA tests. Like the companies above, they check your Y-DNA and mtDNA to determine your paternal and maternal lineages. Since their web site does not provide details of either test, I cannot compare them.

Unlike Family Tree DNA, they do not keep a database of customer results, so you will not receive any matches to people with similar DNA. Since the company does not have an autosomal test like Family Finder and 23andMe, it cannot provide any admixture percentages. You won’t learn anything about ancestors outside your narrow paternal and maternal lines.

I found some interesting data on the web site. Even though this site specifically attracts people of African descent, 35% of the paternal line tests show European ancestry. Much of that non-African DNA was introduced into the family tree during the era of slavery. In addition, 8% of their maternal line samples show non-African haplogroups.

An article in the Wall Street Journal was critical of the African DNA test reports provided by this company. Independent experts say that mitochondrial DNA is not sufficient to nail down an ancestor’s origin to a specific country.

Furthermore, the large migrations of Africans over the last 3,000 years means that the typical black American’s DNA will match Africans living today in several countries. Even the founder of African DNA was quoted in the article that the country-specific reports his company provides are largely a “best guess.”

The testing prices at African DNA are higher than those of the companies listed above. Even if you have your African DNA test done elsewhere, the African Ancestry web site includes some interesting information on African heritage and a list of country-by-country resources in Africa for genealogists.

Other African DNA Tests of Uncertain Quality

DNA Tribes uses autosomal markers representing all your ancestors. But unlike AncestryDNA, Family Finder and 23andMe, which check nearly a million autosomal SNPs, DNA Tribes checks a maximum of 27 STRs.

I won’t try to explain the difference between an STR and a SNP here. But autosomal STRs are what police forces around the world have been collecting from criminals for decades.

The company examined 383,000 STR records and claims to have identified major genetic regions around the world. They compare your DNA with their proprietary database and issue reports on your most closely matched regions.

The company does not share its database or reveal its methods. And independent experts are skeptical when such detailed reports arise from so few markers.

Roots for Real offers Y-DNA, mtDNA, and an autosomal test based on 16 STR markers. They position their autosomal admixture test as an African DNA test. But their database is only about one third the size of the already questionable DNA Tribes test. And all of their tests are overpriced compared to market leaders Family Tree DNA, 23andMe, and Ancestry.com.

 

Mitochondrial Eve (mtDNA)

Mitochondrial Eve

From Wikipedia, the free encyclopedia
Haplogroup Modern humans
Early diversification.PNG
Possible time of origin c. 100–230 kya[1]
Possible place of origin East Africa
Ancestor n/a
Descendants Mitochondrial macro-haplogroups L0, L1, and L5
Defining mutations None

In human genetics, the Mitochondrial Eve (also mt-Eve, mt-MRCA) is the matrilineal most recent common ancestor (MRCA) of all currently living humans, i.e., the most recent woman from whom all living humans descend in an unbroken line purely through their mothers, and through the mothers of those mothers, back until all lines converge on one woman. Mitochondrial Eve lived later than Homo heidelbergensis and the emergence of Homo neanderthalensis, but earlier than the out of Africa migration,[2] but her age is not known with certainty; a 2009 estimate cites an age between c. 152 and 234 thousand years ago (95% CI);[3] a 2013 study cites a range of 99–148 thousand years ago.[4]

Because mitochondrial DNA (mtDNA) is almost exclusively passed from mother to offspring without recombination (see the exception at paternal mtDNA transmission), most mtDNA in every living person differs only by the mutations that have occurred over generations in the germ cell mtDNA since the conception of the original “Mitochondrial Eve”.

The male analog to the Mitochondrial Eve is the Y-chromosomal Adam, the member of Homo sapiens sapiens from whom all living humans are patrilineally descended. Rather than mtDNA, the inherited DNA in the male case is the nuclear Y chromosome. Mitochondrial Eve and Y-chromosomal Adam need not have lived at the same time.[5]

As of 2013, estimates for mt-MRCA and Y-MRCA alike are still subject to substantial uncertainty; thus, Y-MRCA has been estimated to have lived during a wide range of times from 180,000 to 581,000 years ago[6][7][8] (with a most likely age of between 120,000 and 156,000 years ago, roughly consistent with the estimate for mt-MRCA[4][9]).

The name “Mitochondrial Eve” alludes to biblical Eve.[10] This has led to repeated misrepresentations or misconceptions in journalistic accounts on the topic. The title of “Mitochondrial Eve” is not permanently fixed to a single individual, but rather shifts forward in time over the course of human history as maternal lineages become extinct. Unlike her biblical namesake, she was not the only living human female of her time. However, by the definition of Mitochondrial Eve, her female contemporaries, though they may have descendants alive today, do not have any descendants today who descend in an unbroken female line of descent.

African Genetic Project Enrollment 23andMe

Your African heritage can help others discover theirs.

Join the African Genetics Project and help people across the world uncover their African roots.

African Genetics Project Enrollment

 

You just need to answer some eligibility questions to see if you qualify.

Personal Info
Questions
Consents
Finish

Please check that you meet all criteria below:

  1. All four of your grandparents were born in the same African country or come from the same ethnic or tribal group within one of the following countries: Angola, Benin, Burkina Faso, Cameroon, Gabon, Ghana, Guinea Bissau, Guinea, Côte d’Ivoire, Liberia, Republic of Congo, Senegal, Sudan, Togo.
  2. You reside in the United States
  3. You have internet access
  4. You can read and write English fluently
  5. You are over 18 years old

Who is enrolling?

  • Enrolling myself
  • Enrolling as legal representative for another adult
I certify that to the best of my knowledge the information I will provide during the enrollment process is accurate. I understand that if I misrepresent any information to obtain a 23andMe kit I may be liable to pay the full price for the kit.

 

 

 

 

Genetics Project” Update April 15, 2017
Published by 23andMe under 23andMe Research, Ancestry October, 2016
To enhance its research and enrich its customer experience, 23andMe is launching the African Genetics Project, Africa_icon recruiting people who emigrated from, or whose parents emigrated from several specific countries in Sub-Saharan Africa.

Africa is the birthplace of all humanity, and its people are the most genetically diverse in all the world, yet our knowledge of that diversity is limited. This newest project follows continuing efforts by 23andMe to enrich our understanding of the human story and increase diversity in genetic research, while also providing more detailed ancestry results for 23andMe customers with recent African ancestry.

23andMe’s African Genetics Project is offering kits at no cost to people with all four of their grandparents born in the same African country or from the same ethnic or tribal group within one of the following countries — Angola, Benin, Burkina Faso, Cameroon, Ethiopia, Gabon, Gambia, Guinea Bissau, Guinea, Ivory coast, Liberia, Republic of Congo, Senegal, Somalia, Sudan and Togo. The west African countries in that list are a priority for 23andMe because the majority of slaves brought from Africa to the Americas were brought from these African locations. We are also gathering data from individuals with all four grandparents from Somalia, Sudan and Ethiopia to aid in identifying ancestry for more recent immigrants and to improve our reference populations for Africa.

This effort is unique in many respects, but primarily because it allows people of African ancestry who know where in Africa their family came from, to help others with African ancestry discover more about their own African roots. The effort may also yield insights into the TransAtlantic slave trade, and migrations within Africa over the last few hundred years.

While the goals of this project are focused primarily on improving ancestry insights, the African Genetics Project is part of a long list of efforts undertaken by 23andMe to improve diversity in research. Some estimates show that more than 90 percent of the research into the genetics underlying disease is on individuals of European descent alone, but for many conditions an individual’s ethnicity plays an important role and the insights from those studies fall short of helping people of other backgrounds.

There are a number of reasons for the lack of diversity — historical, cultural, economic and social — but by reaching out and recruiting people from all backgrounds it will also ensure that everyone benefits from advances in genetic science.

Over the last five years, 23andMe has undertaken several initiatives on that front including its Roots Into the Future project to study the genetics of disease impacting African Americans, the first-ever genetic portrait of the United States that mapped the country’s Native American, African and European ancestry, and more recently a NIH-funded project to develop a new way to detect disease causing genetic variants among ethnically mixed populations.

Taken together, these initiatives have helped 23andMe improve diversity in its research. The African Genetics Project is part of that same effort and it will allow 23andMe to identify genetic similarities of people from specific locations in Africa. This in turn will not only improve what we can tell our customers with African ancestry, but will also aid our research into how people migrated within and from Africa over the last 5,000 years.

Read more at https://blog.23andme.com/23andme-research/the-african-genetics-project/#tfHZ4OBtqyGpoJyf.99

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